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| Variant ID | 396 |
|---|---|
| Genomic Coordinate (GRCh38) | g.22133522G>T |
| Variant | c.1303-1G>T |
| Variant Start Position | 1303 |
| Location | Intron 11 |
| Amino Acid Change | p.? |
| ACMG Call | Pathogenic |
| ACMG Call Last Revised Date | 4/28/2021 |
| Predicted ACMG Call | Pathogenic | Effect Type | Splice acceptor |
| Variant Type | Splicing |
| PMID | 26051471, 34806794 |
| Article Count | 2 |
| Times Observed | 3-5 |
| Clinical Phenotype | Tooth Abscesses and/or Excessive Dental Caries, Other Musculoskeletal Abnormalities, Lower Limb Deformities |
| ACMG Categories | pvs1, ps3, pm2, ppc |
| ACMG Explanations | pvs1: This is a loss of function variant. pm2: chrX:22151639 ref:G alt:A was not found in gnomAD exomes or genomes. |
| Variant in Clinvar | Yes |
| ClinVar Classification | Pathogenic |
| Categories In Literature | ppc, ps3 |
| No Contrary Evidence Found | Yes |
| ExAC Allele Frequency | - |
| Thousand Genomes Allel Frequency | - |
| Ontology Relations | 26051471: fx/exon skipping 26051471: assay/reverse transcription pcr 26051471: model/patient rna sample |
| hg19 Mapping Failed | No |
| Literature Alleles | X-22151639-G-A |
| GnomAD Alleles | - |
| DBNSFP Alleles | X-22151639-G-A |
| Other Alleles | - |
| Note | nan |
| Warnings | - |